PhytophthoraV1, Main, Exploration, bibRecord, 000761

Genome-wide analysis of the soybean CRK-family and transcriptional regulation by biotic stress signals triggering plant immunity.

Identifieur interne : 000761 ( Main/Exploration ); précédent : 000760; suivant : 000762

Genome-wide analysis of the soybean CRK-family and transcriptional regulation by biotic stress signals triggering plant immunity.

Auteurs : Leonardo Delgado-Cerrone [Uruguay] ; Alfonso Alvarez [Uruguay] ; Eilyn Mena [Uruguay] ; Inés Ponce De Le N [Uruguay] ; Marcos Montesano [Uruguay]

Source :

PloS one [ 1932-6203 ] ; 2018.

RBID : pubmed:30440039

Descripteurs français

KwdFr :
- Arabidopsis (génétique), Génome végétal (génétique), Génome végétal (immunologie), Immunité des plantes (génétique), Phylogenèse (MeSH), Protein kinases (génétique), Protein kinases (immunologie), Protéines végétales (génétique), Racines de plante (génétique), Racines de plante (immunologie), Régulation de l'expression des gènes végétaux (génétique), Régulation de l'expression des gènes végétaux (immunologie), Soja (croissance et développement), Soja (génétique), Stress physiologique (génétique), Stress physiologique (immunologie).
MESH :
- croissance et développement : Soja.
- génétique : Arabidopsis, Génome végétal, Immunité des plantes, Protein kinases, Protéines végétales, Racines de plante, Régulation de l'expression des gènes végétaux, Soja, Stress physiologique.
- immunologie : Génome végétal, Protein kinases, Racines de plante, Régulation de l'expression des gènes végétaux, Stress physiologique.
- Phylogenèse.

English descriptors

KwdEn :
- Arabidopsis (genetics), Gene Expression Regulation, Plant (genetics), Gene Expression Regulation, Plant (immunology), Genome, Plant (genetics), Genome, Plant (immunology), Phylogeny (MeSH), Plant Immunity (genetics), Plant Proteins (genetics), Plant Roots (genetics), Plant Roots (immunology), Protein Kinases (genetics), Protein Kinases (immunology), Soybeans (genetics), Soybeans (growth & development), Stress, Physiological (genetics), Stress, Physiological (immunology).
MESH :
- chemical , genetics : Plant Proteins, Protein Kinases.
- genetics : Arabidopsis, Gene Expression Regulation, Plant, Genome, Plant, Plant Immunity, Plant Roots, Soybeans, Stress, Physiological.
- growth & development : Soybeans.
- immunology : Gene Expression Regulation, Plant, Genome, Plant, Plant Roots, Protein Kinases, Stress, Physiological.
- Phylogeny.

Abstract

Cysteine-rich receptor-like kinases (CRKs) are transmembrane proteins that exhibit ectodomains containing the domain of unknown function 26 (DUF26). The CRKs form a large subfamily of receptor-like kinases in plants, and their possible functions remain to be elucidated. Several lines of evidence suggest that CRKs play important roles in plant defense responses to environmental stress, including plant immunity. We performed a genome-wide analysis of CRK encoding genes in soybean (Glycine max). We found 91 GmCRKs distributed in 16 chromosomes, and identified several tandem and segmental duplications, which influenced the expansion of this gene family. According to our phylogenetic analysis, GmCRKs are grouped in four clades. Furthermore, 12% of the members exhibited GmCRKs with a duplicated bi-modular organization of the ectodomains, containing four DUF26 domains. Expression analysis of GmCRKs was performed by exploring publicly available databases, and by RT-qPCR analysis of selected genes in soybean leaves responding to biotic stress signals. GmCRKs exhibited diverse expression patterns in leaves, stems, roots, and other tissues. Some of them were highly expressed in only one type of tissue, suggesting predominant roles in specific tissues. Furthermore, several GmCRKs were induced with PAMPs, DAMPs and the pathogens Phakopsora pachyrhizi and Phytophthora sojae. Expression profiles of several GmCRKs encoding highly similar proteins exhibited antagonist modes of regulation. The results suggest a fine-tuning control of GmCRKs transcriptional regulation in response to external stimuli, including PAMPs and DAMPs. This study offers a comprehensive view of the GmCRKs family in soybean, and provides a foundation for evolutionary and functional analysis of this family of plant proteins involved in the perception of pathogens and activation of plant immunity.

DOI: 10.1371/journal.pone.0207438
PubMed: 30440039
PubMed Central: PMC6237359

Affiliations:

Uruguay

Links toward previous steps (curation, corpus...)

to stream Main, to step Corpus: 000622
to stream Main, to step Curation: 000622

Le document en format XML

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<term>Genome, Plant (genetics)</term>
<term>Genome, Plant (immunology)</term>
<term>Phylogeny (MeSH)</term>
<term>Plant Immunity (genetics)</term>
<term>Plant Proteins (genetics)</term>
<term>Plant Roots (genetics)</term>
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<term>Protein Kinases (genetics)</term>
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<term>Génome végétal (immunologie)</term>
<term>Immunité des plantes (génétique)</term>
<term>Phylogenèse (MeSH)</term>
<term>Protein kinases (génétique)</term>
<term>Protein kinases (immunologie)</term>
<term>Protéines végétales (génétique)</term>
<term>Racines de plante (génétique)</term>
<term>Racines de plante (immunologie)</term>
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<term>Plant Roots</term>
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<front><div type="abstract" xml:lang="en">Cysteine-rich receptor-like kinases (CRKs) are transmembrane proteins that exhibit ectodomains containing the domain of unknown function 26 (DUF26). The CRKs form a large subfamily of receptor-like kinases in plants, and their possible functions remain to be elucidated. Several lines of evidence suggest that CRKs play important roles in plant defense responses to environmental stress, including plant immunity. We performed a genome-wide analysis of CRK encoding genes in soybean (Glycine max). We found 91 GmCRKs distributed in 16 chromosomes, and identified several tandem and segmental duplications, which influenced the expansion of this gene family. According to our phylogenetic analysis, GmCRKs are grouped in four clades. Furthermore, 12% of the members exhibited GmCRKs with a duplicated bi-modular organization of the ectodomains, containing four DUF26 domains. Expression analysis of GmCRKs was performed by exploring publicly available databases, and by RT-qPCR analysis of selected genes in soybean leaves responding to biotic stress signals. GmCRKs exhibited diverse expression patterns in leaves, stems, roots, and other tissues. Some of them were highly expressed in only one type of tissue, suggesting predominant roles in specific tissues. Furthermore, several GmCRKs were induced with PAMPs, DAMPs and the pathogens Phakopsora pachyrhizi and Phytophthora sojae. Expression profiles of several GmCRKs encoding highly similar proteins exhibited antagonist modes of regulation. The results suggest a fine-tuning control of GmCRKs transcriptional regulation in response to external stimuli, including PAMPs and DAMPs. This study offers a comprehensive view of the GmCRKs family in soybean, and provides a foundation for evolutionary and functional analysis of this family of plant proteins involved in the perception of pathogens and activation of plant immunity.</div>
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<Abstract><AbstractText>Cysteine-rich receptor-like kinases (CRKs) are transmembrane proteins that exhibit ectodomains containing the domain of unknown function 26 (DUF26). The CRKs form a large subfamily of receptor-like kinases in plants, and their possible functions remain to be elucidated. Several lines of evidence suggest that CRKs play important roles in plant defense responses to environmental stress, including plant immunity. We performed a genome-wide analysis of CRK encoding genes in soybean (Glycine max). We found 91 GmCRKs distributed in 16 chromosomes, and identified several tandem and segmental duplications, which influenced the expansion of this gene family. According to our phylogenetic analysis, GmCRKs are grouped in four clades. Furthermore, 12% of the members exhibited GmCRKs with a duplicated bi-modular organization of the ectodomains, containing four DUF26 domains. Expression analysis of GmCRKs was performed by exploring publicly available databases, and by RT-qPCR analysis of selected genes in soybean leaves responding to biotic stress signals. GmCRKs exhibited diverse expression patterns in leaves, stems, roots, and other tissues. Some of them were highly expressed in only one type of tissue, suggesting predominant roles in specific tissues. Furthermore, several GmCRKs were induced with PAMPs, DAMPs and the pathogens Phakopsora pachyrhizi and Phytophthora sojae. Expression profiles of several GmCRKs encoding highly similar proteins exhibited antagonist modes of regulation. The results suggest a fine-tuning control of GmCRKs transcriptional regulation in response to external stimuli, including PAMPs and DAMPs. This study offers a comprehensive view of the GmCRKs family in soybean, and provides a foundation for evolutionary and functional analysis of this family of plant proteins involved in the perception of pathogens and activation of plant immunity.</AbstractText>
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<ForeName>Leonardo</ForeName>
<Initials>L</Initials>
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<ForeName>Alfonso</ForeName>
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<AffiliationInfo><Affiliation>Laboratorio de Fisiología Vegetal, Centro de Investigaciones Nucleares, Facultad de Ciencias, Universidad de la República, Montevideo, Uruguay.</Affiliation>
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<ForeName>Eilyn</ForeName>
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<AffiliationInfo><Affiliation>Departamento de Biología Molecular, Instituto de Investigaciones Biológicas Clemente Estable, Montevideo, Uruguay.</Affiliation>
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<Author ValidYN="Y"><LastName>Ponce de León</LastName>
<ForeName>Inés</ForeName>
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<AffiliationInfo><Affiliation>Departamento de Biología Molecular, Instituto de Investigaciones Biológicas Clemente Estable, Montevideo, Uruguay.</Affiliation>
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<ForeName>Marcos</ForeName>
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<AffiliationInfo><Affiliation>Departamento de Biología Molecular, Instituto de Investigaciones Biológicas Clemente Estable, Montevideo, Uruguay.</Affiliation>
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<AffiliationInfo><Affiliation>Laboratorio de Fisiología Vegetal, Centro de Investigaciones Nucleares, Facultad de Ciencias, Universidad de la República, Montevideo, Uruguay.</Affiliation>
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<MeshHeading><DescriptorName UI="D018517" MajorTopicYN="N">Plant Roots</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
<QualifierName UI="Q000276" MajorTopicYN="N">immunology</QualifierName>
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<MeshHeading><DescriptorName UI="D013312" MajorTopicYN="N">Stress, Physiological</DescriptorName>
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<QualifierName UI="Q000276" MajorTopicYN="N">immunology</QualifierName>
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<CoiStatement>The authors have declared that no competing interests exist.</CoiStatement>
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<Day>08</Day>
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<Month>10</Month>
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Genome-wide analysis of the soybean CRK-family and transcriptional regulation by biotic stress signals triggering plant immunity.

Genome-wide analysis of the soybean CRK-family and transcriptional regulation by biotic stress signals triggering plant immunity.

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